SNP Report
Basic Infomation
| Name | rs12596526 dbSNP |
|---|---|
| Location | chr:16,11408692 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 71)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074959 | 0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11074960 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11074961 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11640138 | 0.87[JPT][hapmap] |
| rs11640788 | 0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11641715 | 0.82[AMR][1000 genomes] |
| rs11644626 | 0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11645146 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11645318 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11645404 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11645592 | 0.87[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs11646534 | 0.84[CHB][hapmap];0.88[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11647972 | 0.83[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12149160 | 0.83[ASN][1000 genomes] |
| rs12325495 | 0.84[ASN][1000 genomes] |
| rs12444882 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12446094 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12446881 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12447450 | 0.85[AMR][1000 genomes] |
| rs12447782 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12448960 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12597893 | 0.89[ASN][1000 genomes] |
| rs12598361 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12599600 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12921987 | 0.85[ASN][1000 genomes] |
| rs12930005 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1345878 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1345879 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1559392 | 0.81[AMR][1000 genomes] |
| rs171470 | 0.86[ASN][1000 genomes] |
| rs1874021 | 0.85[CEU][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1989698 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2301365 | 0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs243314 | 0.84[ASN][1000 genomes] |
| rs243318 | 0.87[JPT][hapmap] |
| rs243323 | 0.87[JPT][hapmap] |
| rs243324 | 0.80[JPT][hapmap] |
| rs243325 | 0.80[JPT][hapmap] |
| rs243327 | 0.80[JPT][hapmap] |
| rs243330 | 0.80[JPT][hapmap] |
| rs2903826 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs34007496 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs34165648 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34850017 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs35051965 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs36056414 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs36090551 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs398364 | 0.85[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4451969 | 0.83[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs4780355 | 0.81[JPT][hapmap] |
| rs4780359 | 0.80[JPT][hapmap] |
| rs62023594 | 0.82[AMR][1000 genomes] |
| rs62023635 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62023658 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6498180 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7185158 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7187741 | 0.89[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7189239 | 0.88[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7191538 | 0.88[JPT][hapmap] |
| rs7196694 | 0.81[AMR][1000 genomes] |
| rs7199624 | 0.81[ASN][1000 genomes] |
| rs7204734 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs8043625 | 0.88[JPT][hapmap] |
| rs8044010 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8057417 | 0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs8063167 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs918737 | 0.82[ASN][1000 genomes] |
| rs918738 | 0.84[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs918739 | 0.81[ASN][1000 genomes] |
| rs9929997 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9936459 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RMI2 | Proximal transcriptional regulation |
| ENSG00000199668 | Proximal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| PRM2 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014