SNP Report

Basic Infomation

Name	rs398364 dbSNP
Location	chr:16,11387164
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 67)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10852332	0.86[ASN][1000 genomes]
rs11074959	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11074960	0.88[AMR][1000 genomes]
rs11074961	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs11640138	0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs11640788	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11641715	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11644626	0.89[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11645592	0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11646534	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11647972	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12446881	0.85[CEU][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs12447450	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12447782	0.81[AMR][1000 genomes]
rs12448960	0.85[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12596526	0.85[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12598361	0.81[AMR][1000 genomes]
rs12599600	0.85[CEU][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.93[MEX][hapmap];0.82[AMR][1000 genomes]
rs12923756	0.82[ASN][1000 genomes]
rs12930005	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1345878	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1345879	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs149597	0.86[JPT][hapmap]
rs1559392	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1646019	0.81[ASN][1000 genomes]
rs171470	0.96[ASN][1000 genomes]
rs1874021	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2301365	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs243314	0.98[ASN][1000 genomes]
rs243317	0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs243318	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs243319	0.80[ASN][1000 genomes]
rs243323	0.88[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs243324	0.82[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs243325	0.82[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap]
rs243327	0.82[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs243329	0.81[ASN][1000 genomes]
rs243330	0.82[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2903826	0.82[AMR][1000 genomes]
rs33977706	0.84[AMR][1000 genomes]
rs34007496	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34165648	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34850017	0.85[EUR][1000 genomes]
rs35051965	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36056414	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36090551	0.83[EUR][1000 genomes]
rs397750	0.88[YRI][hapmap]
rs442154	0.82[ASN][1000 genomes]
rs4451969	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4780355	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs4780359	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs62023594	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62023635	0.88[AMR][1000 genomes]
rs62025663	0.82[EUR][1000 genomes]
rs6498180	0.81[AMR][1000 genomes]
rs7185158	0.81[AMR][1000 genomes]
rs7187741	0.81[CHD][hapmap]
rs7189239	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7191538	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7196694	0.87[AMR][1000 genomes]
rs7204734	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8043625	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8044010	0.81[AMR][1000 genomes]
rs8057417	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8058983	0.82[ASN][1000 genomes]
rs8063167	0.85[CEU][hapmap];0.93[MEX][hapmap];0.81[AMR][1000 genomes]
rs9929997	0.82[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SOCS1	Distal transcriptional regulation
ENSG00000238409	RNA binding protein mediated regulation
RMI2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
CHCHD5	SCAN
C16orf75	seeQTL
BFAR	SCAN