SNP Report
Name | rs398364   dbSNP |
---|---|
Location | chr:16,11387164 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10852332 | 0.86[ASN][1000 genomes] |
rs11074959 | 0.85[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs11074960 | 0.88[AMR][1000 genomes] |
rs11074961 | 0.85[CEU][hapmap];0.82[AMR][1000 genomes] |
rs11640138 | 0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap] |
rs11640788 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11641715 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11644626 | 0.89[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11645592 | 0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11646534 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11647972 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12446881 | 0.85[CEU][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes] |
rs12447450 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12447782 | 0.81[AMR][1000 genomes] |
rs12448960 | 0.85[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs12596526 | 0.85[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12598361 | 0.81[AMR][1000 genomes] |
rs12599600 | 0.85[CEU][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.93[MEX][hapmap];0.82[AMR][1000 genomes] |
rs12923756 | 0.82[ASN][1000 genomes] |
rs12930005 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1345878 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1345879 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs149597 | 0.86[JPT][hapmap] |
rs1559392 | 0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs1646019 | 0.81[ASN][1000 genomes] |
rs171470 | 0.96[ASN][1000 genomes] |
rs1874021 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2301365 | 0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs243314 | 0.98[ASN][1000 genomes] |
rs243317 | 0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes] |
rs243318 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs243319 | 0.80[ASN][1000 genomes] |
rs243323 | 0.88[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs243324 | 0.82[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
rs243325 | 0.82[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap] |
rs243327 | 0.82[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes] |
rs243329 | 0.81[ASN][1000 genomes] |
rs243330 | 0.82[CHB][hapmap];0.83[CHD][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes] |
rs2903826 | 0.82[AMR][1000 genomes] |
rs33977706 | 0.84[AMR][1000 genomes] |
rs34007496 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs34165648 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs34850017 | 0.85[EUR][1000 genomes] |
rs35051965 | 0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs36056414 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs36090551 | 0.83[EUR][1000 genomes] |
rs397750 | 0.88[YRI][hapmap] |
rs442154 | 0.82[ASN][1000 genomes] |
rs4451969 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs4780355 | 0.83[CHD][hapmap];0.93[JPT][hapmap] |
rs4780359 | 0.87[CHB][hapmap];0.85[JPT][hapmap] |
rs62023594 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs62023635 | 0.88[AMR][1000 genomes] |
rs62025663 | 0.82[EUR][1000 genomes] |
rs6498180 | 0.81[AMR][1000 genomes] |
rs7185158 | 0.81[AMR][1000 genomes] |
rs7187741 | 0.81[CHD][hapmap] |
rs7189239 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7191538 | 0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs7196694 | 0.87[AMR][1000 genomes] |
rs7204734 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs8043625 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs8044010 | 0.81[AMR][1000 genomes] |
rs8057417 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs8058983 | 0.82[ASN][1000 genomes] |
rs8063167 | 0.85[CEU][hapmap];0.93[MEX][hapmap];0.81[AMR][1000 genomes] |
rs9929997 | 0.82[AMR][1000 genomes] |
Symbol | Regulation type |
---|---|
SOCS1 | Distal transcriptional regulation |
ENSG00000238409 | RNA binding protein mediated regulation |
RMI2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014