SNP Report

Basic Infomation

Name	rs12448960 dbSNP
Location	chr:16,11419378
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 58)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11074959	0.86[AMR][1000 genomes]
rs11074960	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11074961	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11640788	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11641715	0.81[AMR][1000 genomes]
rs11644626	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs11645146	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11645318	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11645404	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11645592	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs11646534	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11647972	0.84[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11648940	0.83[ASN][1000 genomes]
rs12149160	0.92[ASN][1000 genomes]
rs12325495	0.95[ASN][1000 genomes]
rs12444882	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12446094	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12446881	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12447450	0.83[AMR][1000 genomes]
rs12447782	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12596526	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12597893	0.96[ASN][1000 genomes]
rs12598361	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12599600	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12921987	0.95[ASN][1000 genomes]
rs12930005	0.82[AMR][1000 genomes]
rs1345878	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1345879	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1874021	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs1989698	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2301365	0.81[AMR][1000 genomes]
rs28469634	0.88[ASN][1000 genomes]
rs2903826	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34007496	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34165648	0.89[AMR][1000 genomes]
rs34850017	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35051965	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36056414	0.82[AMR][1000 genomes]
rs36090551	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs398364	0.85[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62023594	0.81[AMR][1000 genomes]
rs62023635	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62023658	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62025663	0.86[ASN][1000 genomes]
rs6498180	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7185158	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7187741	0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7194978	0.81[ASN][1000 genomes]
rs7199624	0.88[ASN][1000 genomes]
rs7204734	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8044010	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8057417	0.81[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8063167	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs918737	0.91[ASN][1000 genomes]
rs918738	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs918739	0.90[ASN][1000 genomes]
rs9929997	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9936459	0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RMI2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
C16orf75	seeQTL
MGC24665	Pritchard
BFAR	SCAN