SNP Report
Basic Infomation
| Name | rs12149160 dbSNP |
|---|---|
| Location | chr:16,11439303 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074960 | 0.91[ASN][1000 genomes] |
| rs11074961 | 0.93[ASN][1000 genomes] |
| rs11645146 | 0.96[ASN][1000 genomes] |
| rs11645318 | 0.90[ASN][1000 genomes] |
| rs11645404 | 0.96[ASN][1000 genomes] |
| rs11648940 | 0.88[ASN][1000 genomes] |
| rs12325495 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12444882 | 0.96[ASN][1000 genomes] |
| rs12446094 | 0.96[ASN][1000 genomes] |
| rs12446881 | 0.96[ASN][1000 genomes] |
| rs12447782 | 0.96[ASN][1000 genomes] |
| rs12448960 | 0.92[ASN][1000 genomes] |
| rs12596526 | 0.83[ASN][1000 genomes] |
| rs12597893 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12598361 | 0.90[ASN][1000 genomes] |
| rs12599600 | 0.96[ASN][1000 genomes] |
| rs12921987 | 0.96[ASN][1000 genomes] |
| rs171470 | 0.81[AMR][1000 genomes] |
| rs1989698 | 0.91[ASN][1000 genomes] |
| rs243314 | 0.81[AMR][1000 genomes] |
| rs28469634 | 0.82[ASN][1000 genomes] |
| rs2903826 | 0.81[ASN][1000 genomes] |
| rs34007496 | 0.94[ASN][1000 genomes] |
| rs34850017 | 0.99[ASN][1000 genomes] |
| rs35051965 | 0.83[ASN][1000 genomes] |
| rs36090551 | 0.93[ASN][1000 genomes] |
| rs62023635 | 0.91[ASN][1000 genomes] |
| rs62023658 | 0.96[ASN][1000 genomes] |
| rs62025663 | 0.91[ASN][1000 genomes] |
| rs6498180 | 0.91[ASN][1000 genomes] |
| rs7185158 | 0.91[ASN][1000 genomes] |
| rs7187741 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7189239 | 0.80[EUR][1000 genomes] |
| rs7194978 | 0.80[ASN][1000 genomes] |
| rs7199624 | 0.87[ASN][1000 genomes] |
| rs8044010 | 0.91[ASN][1000 genomes] |
| rs8063167 | 0.91[ASN][1000 genomes] |
| rs918737 | 0.99[ASN][1000 genomes] |
| rs918738 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs918739 | 0.98[ASN][1000 genomes] |
| rs9929997 | 0.95[ASN][1000 genomes] |
| rs9936459 | 0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RMI2 | Proximal transcriptional regulation |
| ENSG00000238774 | Proximal transcriptional regulation |
| ENSG00000263080 | Proximal transcriptional regulation |
| POLR3B | Distal transcriptional regulation |
| SLC16A3 | Distal transcriptional regulation |
| ID1 | Distal transcriptional regulation |
| ENSG00000215068 | Distal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| GSPT1 | Distal transcriptional regulation |
| ENSG00000266163 | Distal transcriptional regulation |
| TNP2 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| C16orf75 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014