SNP Report
Basic Infomation
| Name | rs11641715 dbSNP |
|---|---|
| Location | chr:16,11371279 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074959 | 0.84[ASN][1000 genomes] |
| rs11074960 | 0.82[AMR][1000 genomes] |
| rs11640138 | 0.87[ASN][1000 genomes] |
| rs11640788 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11644184 | 0.87[ASN][1000 genomes] |
| rs11644626 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11645592 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11646534 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11647972 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12447450 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12448960 | 0.81[AMR][1000 genomes] |
| rs12596526 | 0.82[AMR][1000 genomes] |
| rs12923756 | 0.82[ASN][1000 genomes] |
| rs12930005 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1345878 | 0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1345879 | 0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1559392 | 0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1646019 | 0.81[ASN][1000 genomes] |
| rs171470 | 0.85[ASN][1000 genomes] |
| rs1874021 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2301365 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs243314 | 0.83[ASN][1000 genomes] |
| rs243317 | 0.80[ASN][1000 genomes] |
| rs243318 | 0.82[ASN][1000 genomes] |
| rs243319 | 0.80[ASN][1000 genomes] |
| rs243323 | 0.81[ASN][1000 genomes] |
| rs243324 | 0.81[ASN][1000 genomes] |
| rs243327 | 0.81[ASN][1000 genomes] |
| rs243329 | 0.81[ASN][1000 genomes] |
| rs243330 | 0.82[ASN][1000 genomes] |
| rs33977706 | 0.84[AMR][1000 genomes] |
| rs34165648 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34850017 | 0.81[EUR][1000 genomes] |
| rs36056414 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs398364 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs442154 | 0.82[ASN][1000 genomes] |
| rs4451969 | 0.86[ASN][1000 genomes] |
| rs62023594 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs62023635 | 0.82[AMR][1000 genomes] |
| rs7189239 | 0.82[ASN][1000 genomes] |
| rs7191538 | 0.81[ASN][1000 genomes] |
| rs7196694 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7204734 | 0.84[ASN][1000 genomes] |
| rs8043625 | 0.83[ASN][1000 genomes] |
| rs8053977 | 0.86[ASN][1000 genomes] |
| rs8057417 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs8058983 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRM2 | Proximal transcriptional regulation |
| PRM3 | Proximal transcriptional regulation |
| ENSG00000212228 | Proximal transcriptional regulation |
| PRM1 | Distal transcriptional regulation |
| ENSG00000199668 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014