SNP Report

Basic Infomation

Name	rs4451969 dbSNP
Location	chr:16,11383519
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 57)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10852332	0.84[ASN][1000 genomes]
rs11074959	0.94[ASN][1000 genomes]
rs11640138	0.81[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11640788	0.94[ASN][1000 genomes]
rs11641715	0.86[ASN][1000 genomes]
rs11643024	0.80[AMR][1000 genomes]
rs11644184	0.82[ASN][1000 genomes]
rs11644626	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11645592	0.81[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11646534	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11647972	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12446881	0.80[CHD][hapmap]
rs12447450	0.89[ASN][1000 genomes]
rs12596526	0.83[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs12599600	0.80[CHD][hapmap]
rs12923756	0.85[ASN][1000 genomes]
rs12930005	0.96[ASN][1000 genomes]
rs1345878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1345879	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs149597	0.86[JPT][hapmap]
rs1559392	0.86[ASN][1000 genomes]
rs1646019	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16958175	0.80[ASN][1000 genomes]
rs171470	0.96[ASN][1000 genomes]
rs171471	0.83[ASN][1000 genomes]
rs1874021	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2301365	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs243314	0.93[ASN][1000 genomes]
rs243317	0.81[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs243318	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs243319	0.84[ASN][1000 genomes]
rs243323	0.88[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs243324	0.82[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs243325	0.82[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs243327	0.82[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs243329	0.84[ASN][1000 genomes]
rs243330	0.82[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs33932899	0.82[ASN][1000 genomes]
rs33977706	0.80[ASN][1000 genomes]
rs34165648	0.95[ASN][1000 genomes]
rs35051965	0.82[ASN][1000 genomes]
rs36056414	0.96[ASN][1000 genomes]
rs398364	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs442154	0.85[ASN][1000 genomes]
rs4780355	0.88[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4780359	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs62023594	0.84[ASN][1000 genomes]
rs7187741	0.86[CHD][hapmap]
rs7189239	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7191538	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7204734	0.94[ASN][1000 genomes]
rs8043625	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8053977	0.81[ASN][1000 genomes]
rs8057417	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8058983	0.85[ASN][1000 genomes]
rs918737	0.80[AMR][1000 genomes]
rs918739	0.80[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000238409	Proximal transcriptional regulation
RMI2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 9)

eQTL related gene	Source
ICOSLG	SCAN
C16orf75	seeQTL
C16orf75	seeQTL
C16orf75	Pritchard
C16orf75	Pritchard
MGC24665	Pritchard
MGC24665	Pritchard
DEXI	SCAN
C16orf75	GTEx