SNP Report
Basic Infomation
| Name | rs8043625 dbSNP |
|---|---|
| Location | chr:16,11361895 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 60)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074959 | 0.87[ASN][1000 genomes] |
| rs11074961 | 0.81[JPT][hapmap] |
| rs1111186 | 0.91[ASN][1000 genomes] |
| rs11640138 | 0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11640788 | 0.87[ASN][1000 genomes] |
| rs11641715 | 0.83[ASN][1000 genomes] |
| rs11644184 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11644626 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11645592 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11646534 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11647972 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs12325495 | 0.85[AMR][1000 genomes] |
| rs12447450 | 0.86[ASN][1000 genomes] |
| rs12596526 | 0.88[JPT][hapmap] |
| rs12597893 | 0.81[AMR][1000 genomes] |
| rs12923756 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12929112 | 0.92[ASN][1000 genomes] |
| rs12930005 | 0.88[ASN][1000 genomes] |
| rs1345878 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1345879 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs149597 | 0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1559392 | 1.00[ASN][1000 genomes] |
| rs1646019 | 0.98[ASN][1000 genomes] |
| rs16958175 | 0.94[ASN][1000 genomes] |
| rs171470 | 0.84[ASN][1000 genomes] |
| rs171471 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1874021 | 0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2301365 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs243314 | 0.81[ASN][1000 genomes] |
| rs243317 | 0.93[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs243318 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs243319 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs243323 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs243324 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs243325 | 0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs243327 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs243329 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs243330 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs33932899 | 0.95[ASN][1000 genomes] |
| rs33977706 | 0.94[ASN][1000 genomes] |
| rs34165648 | 0.84[ASN][1000 genomes] |
| rs36056414 | 0.88[ASN][1000 genomes] |
| rs398364 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs408665 | 0.81[CHB][hapmap] |
| rs415595 | 0.91[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs416603 | 0.91[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs442154 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4451969 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs4780355 | 0.93[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4780359 | 0.86[JPT][hapmap] |
| rs62023594 | 0.98[ASN][1000 genomes] |
| rs7189239 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7191538 | 0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7195183 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7196694 | 0.93[ASN][1000 genomes] |
| rs7204734 | 0.87[ASN][1000 genomes] |
| rs8053977 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8057417 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs8058983 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs918738 | 0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SOCS1 | Distal transcriptional regulation |
| PRM3 | Distal transcriptional regulation |
| ENSG00000212228 | Distal transcriptional regulation |
| ENSG00000263080 | Distal transcriptional regulation |
| RMI2 | Distal transcriptional regulation |
| RMI2 | RNA binding protein mediated regulation |
| TNP2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014