SNP Report
Basic Infomation
| Name | rs12049447 dbSNP |
|---|---|
| Location | chr:1,113922845 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10458458 | 0.93[CEU][hapmap];0.81[CHB][hapmap];0.80[EUR][1000 genomes] |
| rs10458459 | 0.93[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs10857994 | 0.81[CHB][hapmap] |
| rs11102627 | 0.81[CHB][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap] |
| rs11102628 | 0.81[CHB][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap] |
| rs11102637 | 0.93[CEU][hapmap] |
| rs11102638 | 0.93[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs11102639 | 0.81[CHB][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap] |
| rs11102641 | 0.93[CEU][hapmap];0.80[CHB][hapmap] |
| rs11102647 | 0.81[CHB][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap] |
| rs1112085 | 0.93[CEU][hapmap];0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1112543 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12021783 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12022213 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs12022849 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs12023641 | 0.86[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12024139 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap] |
| rs12026682 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs12030900 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs12031069 | 0.83[JPT][hapmap] |
| rs12032395 | 0.93[CEU][hapmap];0.83[CHB][hapmap] |
| rs12033092 | 0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12033935 | 0.85[ASN][1000 genomes] |
| rs12038473 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs12039669 | 0.93[CEU][hapmap];0.81[CHB][hapmap] |
| rs12039944 | 0.93[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs12045148 | 0.93[CEU][hapmap];0.81[CHB][hapmap] |
| rs12045559 | 0.93[CEU][hapmap] |
| rs12046451 | 0.93[CEU][hapmap];0.81[CHB][hapmap] |
| rs12049093 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12567622 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12568854 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1418607 | 0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1539411 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1573996 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap] |
| rs1936927 | 0.93[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs1936928 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap] |
| rs2027537 | 0.93[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4838988 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap] |
| rs4839320 | 0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4839323 | 0.81[CHB][hapmap];0.80[GIH][hapmap];0.82[MEX][hapmap] |
| rs4839324 | 0.93[CEU][hapmap];0.81[CHB][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap] |
| rs55737954 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs66565865 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6688827 | 0.81[CHB][hapmap];0.82[GIH][hapmap];0.82[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238198 | Distal transcriptional regulation |
| LRIG2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014