SNP Report
Basic Infomation
| Name | rs12568854 dbSNP |
|---|---|
| Location | chr:1,113933570 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10458458 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10458459 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10857994 | 0.85[ASN][1000 genomes] |
| rs11102627 | 0.86[ASN][1000 genomes] |
| rs11102628 | 0.86[ASN][1000 genomes] |
| rs11102630 | 0.86[ASN][1000 genomes] |
| rs1112085 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1112543 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12021783 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12023641 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12024428 | 0.92[ASN][1000 genomes] |
| rs12029305 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12030900 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12032395 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12034178 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12049093 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12049447 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12567622 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1418607 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1539411 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2027536 | 0.93[ASN][1000 genomes] |
| rs2027537 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4839320 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55737954 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs66565865 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6688827 | 0.92[ASN][1000 genomes] |
| rs72687924 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9787276 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | Proximal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| ATG16L2 | Distal transcriptional regulation |
| KRIT1 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| HNRPDL | Distal transcriptional regulation |
| ENOPH1 | Distal transcriptional regulation |
| HIST1H1C | Distal transcriptional regulation |
| RHOC | Distal transcriptional regulation |
| ENSG00000232499 | Distal transcriptional regulation |
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014