SNP Report
Name | rs12568854   dbSNP |
---|---|
Location | chr:1,113933570 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10458458 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10458459 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10857994 | 0.85[ASN][1000 genomes] |
rs11102627 | 0.86[ASN][1000 genomes] |
rs11102628 | 0.86[ASN][1000 genomes] |
rs11102630 | 0.86[ASN][1000 genomes] |
rs1112085 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1112543 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12021783 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12023641 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12024428 | 0.92[ASN][1000 genomes] |
rs12029305 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12030900 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12032395 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12034178 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12049093 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12049447 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12567622 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1418607 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1539411 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2027536 | 0.93[ASN][1000 genomes] |
rs2027537 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4839320 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs55737954 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs66565865 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6688827 | 0.92[ASN][1000 genomes] |
rs72687924 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9787276 | 0.92[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MAGI3 | Proximal transcriptional regulation |
TRPT1 | Distal transcriptional regulation |
NUDT22 | Distal transcriptional regulation |
ATG16L2 | Distal transcriptional regulation |
KRIT1 | Distal transcriptional regulation |
ENSG00000212195 | Distal transcriptional regulation |
HNRPDL | Distal transcriptional regulation |
ENOPH1 | Distal transcriptional regulation |
HIST1H1C | Distal transcriptional regulation |
RHOC | Distal transcriptional regulation |
ENSG00000232499 | Distal transcriptional regulation |
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014