SNP Report
Name | rs10857994   dbSNP |
---|---|
Location | chr:1,113933482 |
Allele | C/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10458458 | 1.00[CHB][hapmap];0.96[JPT][hapmap] |
rs10458459 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
rs11102627 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11102628 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11102630 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11102636 | 0.90[CHB][hapmap];0.96[JPT][hapmap] |
rs11102637 | 0.95[CHB][hapmap];0.96[JPT][hapmap] |
rs11102638 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
rs11102639 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap] |
rs11102641 | 1.00[CHB][hapmap];0.96[JPT][hapmap] |
rs11102647 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap] |
rs1112085 | 1.00[CHB][hapmap];0.96[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1112543 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12021783 | 0.84[ASN][1000 genomes] |
rs12022213 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs12022849 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs12023641 | 0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes] |
rs12024139 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs12024428 | 0.83[ASN][1000 genomes] |
rs12026682 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs12029305 | 0.83[ASN][1000 genomes] |
rs12030900 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
rs12032395 | 1.00[CHB][hapmap];0.96[JPT][hapmap];0.80[ASN][1000 genomes] |
rs12034178 | 0.80[ASN][1000 genomes] |
rs12038473 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs12039669 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs12039944 | 0.94[CHB][hapmap];0.95[JPT][hapmap] |
rs12044485 | 0.95[CHB][hapmap];0.96[JPT][hapmap] |
rs12045148 | 1.00[CHB][hapmap];0.96[JPT][hapmap] |
rs12045559 | 0.95[CHB][hapmap];0.96[JPT][hapmap] |
rs12046451 | 1.00[CHB][hapmap];0.96[JPT][hapmap] |
rs12049093 | 0.84[ASN][1000 genomes] |
rs12049447 | 0.81[CHB][hapmap] |
rs12567622 | 0.86[ASN][1000 genomes] |
rs12568854 | 0.85[ASN][1000 genomes] |
rs1418607 | 1.00[CHB][hapmap];0.96[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1539411 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1573996 | 1.00[CHB][hapmap];0.91[JPT][hapmap] |
rs1936927 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs1936928 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs2027536 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2027537 | 1.00[CHB][hapmap];0.96[JPT][hapmap];0.84[ASN][1000 genomes] |
rs4838988 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs4839320 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4839323 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap] |
rs4839324 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
rs55737954 | 0.84[ASN][1000 genomes] |
rs6688827 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs72687924 | 0.80[ASN][1000 genomes] |
rs9787276 | 0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MAGI3 | Proximal transcriptional regulation |
TRPT1 | Distal transcriptional regulation |
NUDT22 | Distal transcriptional regulation |
ATG16L2 | Distal transcriptional regulation |
KRIT1 | Distal transcriptional regulation |
ENSG00000212195 | Distal transcriptional regulation |
HNRPDL | Distal transcriptional regulation |
ENOPH1 | Distal transcriptional regulation |
HIST1H1C | Distal transcriptional regulation |
RHOC | Distal transcriptional regulation |
ENSG00000232499 | Distal transcriptional regulation |
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014