SNP Report
Name | rs11102639   dbSNP |
---|---|
Location | chr:1,114004883 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10458458 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10458459 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap] |
rs10857994 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap] |
rs11102627 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs11102628 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes] |
rs11102630 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs11102636 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs11102637 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs11102638 | 0.94[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[ASN][1000 genomes] |
rs11102640 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs11102641 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs11102644 | 0.99[ASN][1000 genomes] |
rs11102645 | 0.89[ASN][1000 genomes] |
rs11102647 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1112085 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1112543 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap] |
rs12021500 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12022213 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[ASN][1000 genomes] |
rs12022849 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[ASN][1000 genomes] |
rs12023641 | 0.94[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap] |
rs12024139 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[ASN][1000 genomes] |
rs12025806 | 0.96[ASN][1000 genomes] |
rs12026682 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[ASN][1000 genomes] |
rs12030900 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap] |
rs12032395 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12033666 | 0.99[ASN][1000 genomes] |
rs12038473 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.99[ASN][1000 genomes] |
rs12039226 | 0.99[ASN][1000 genomes] |
rs12039669 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs12039944 | 0.94[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[ASN][1000 genomes] |
rs12043827 | 0.96[ASN][1000 genomes] |
rs12044485 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs12045148 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs12045559 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs12046434 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs12046450 | 0.98[ASN][1000 genomes] |
rs12046451 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs12049447 | 0.81[CHB][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap] |
rs1418607 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1539411 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap] |
rs1573996 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[ASN][1000 genomes] |
rs1936926 | 0.99[ASN][1000 genomes] |
rs1936927 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[ASN][1000 genomes] |
rs1936928 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs2027536 | 0.82[EUR][1000 genomes] |
rs2027537 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2051083 | 0.93[ASN][1000 genomes] |
rs2359413 | 0.91[ASN][1000 genomes] |
rs28661018 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2884705 | 0.89[ASN][1000 genomes] |
rs4546922 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4838988 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[ASN][1000 genomes] |
rs4839320 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap] |
rs4839323 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4839324 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes] |
rs6688827 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes] |
rs72687938 | 0.98[ASN][1000 genomes] |
rs72687939 | 0.99[ASN][1000 genomes] |
rs72687944 | 0.99[ASN][1000 genomes] |
rs72687947 | 0.99[ASN][1000 genomes] |
rs72687948 | 0.99[ASN][1000 genomes] |
rs72687949 | 0.99[ASN][1000 genomes] |
rs72687960 | 0.91[ASN][1000 genomes] |
rs72687961 | 0.90[ASN][1000 genomes] |
rs7413018 | 0.95[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014