SNP Report

Basic Infomation

Name	rs12567622 dbSNP
Location	chr:1,113931145
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10458458	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10458459	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10857994	0.86[ASN][1000 genomes]
rs11102627	0.87[ASN][1000 genomes]
rs11102628	0.87[ASN][1000 genomes]
rs11102630	0.87[ASN][1000 genomes]
rs11102641	0.82[AFR][1000 genomes]
rs11102644	0.82[AFR][1000 genomes]
rs1112085	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1112543	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12021783	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12023641	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12024428	0.93[ASN][1000 genomes]
rs12025806	0.82[AFR][1000 genomes]
rs12029305	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12030900	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12032395	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12034178	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12045559	0.82[AFR][1000 genomes]
rs12049093	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12049447	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12568854	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1418607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1539411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2027536	0.94[ASN][1000 genomes]
rs2027537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2051083	0.82[AFR][1000 genomes]
rs4839320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55737954	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66565865	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6688827	0.93[ASN][1000 genomes]
rs72687924	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72687938	0.82[AFR][1000 genomes]
rs72687939	0.82[AFR][1000 genomes]
rs72687960	0.82[AFR][1000 genomes]
rs9787276	0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAGI3	Proximal transcriptional regulation
ENSG00000202077	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)