SNP Report
Name | rs12567622   dbSNP |
---|---|
Location | chr:1,113931145 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10458458 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10458459 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10857994 | 0.86[ASN][1000 genomes] |
rs11102627 | 0.87[ASN][1000 genomes] |
rs11102628 | 0.87[ASN][1000 genomes] |
rs11102630 | 0.87[ASN][1000 genomes] |
rs11102641 | 0.82[AFR][1000 genomes] |
rs11102644 | 0.82[AFR][1000 genomes] |
rs1112085 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1112543 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12021783 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12023641 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12024428 | 0.93[ASN][1000 genomes] |
rs12025806 | 0.82[AFR][1000 genomes] |
rs12029305 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12030900 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12032395 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12034178 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12045559 | 0.82[AFR][1000 genomes] |
rs12049093 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12049447 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12568854 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1418607 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1539411 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2027536 | 0.94[ASN][1000 genomes] |
rs2027537 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2051083 | 0.82[AFR][1000 genomes] |
rs4839320 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs55737954 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs66565865 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6688827 | 0.93[ASN][1000 genomes] |
rs72687924 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs72687938 | 0.82[AFR][1000 genomes] |
rs72687939 | 0.82[AFR][1000 genomes] |
rs72687960 | 0.82[AFR][1000 genomes] |
rs9787276 | 0.93[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MAGI3 | Proximal transcriptional regulation |
ENSG00000202077 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014