SNP Report
Basic Infomation
| Name | rs66565865 dbSNP |
|---|---|
| Location | chr:1,113923579 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10458458 | 0.80[EUR][1000 genomes] |
| rs1112085 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1112543 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12021783 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12023641 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12033092 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12033935 | 0.84[ASN][1000 genomes] |
| rs12049093 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12049447 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12567622 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12568854 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1418607 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1539411 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2027537 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4839320 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs55737954 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238198 | Distal transcriptional regulation |
| LRIG2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014