SNP Report
Basic Infomation
| Name | rs10920189 dbSNP |
|---|---|
| Location | chr:1,201353827 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920183 | 0.83[JPT][hapmap] |
| rs10920184 | 0.91[CHB][hapmap];0.86[JPT][hapmap] |
| rs1892028 | 0.82[CHB][hapmap];0.83[JPT][hapmap] |
| rs2365652 | 0.91[CHB][hapmap];0.82[JPT][hapmap] |
| rs2719183 | 0.80[ASN][1000 genomes] |
| rs2799677 | 0.87[CHB][hapmap];0.81[JPT][hapmap] |
| rs4128458 | 0.87[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs4606345 | 0.82[CHB][hapmap] |
| rs4915230 | 0.80[ASN][1000 genomes] |
| rs4915232 | 0.93[ASN][1000 genomes] |
| rs4915240 | 0.80[ASN][1000 genomes] |
| rs6703957 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs947485 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs947486 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LAD1 | Proximal transcriptional regulation |
| SULF2 | Distal transcriptional regulation |
| TNNT2 | Distal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014