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rVarBase
SNP Report
Basic Infomation
Name
rs4915232  
dbSNP
Location
chr:1,201347946
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920179
0.81[CEU][hapmap]
rs10920184
0.83[ASN][1000 genomes]
rs10920189
0.93[ASN][1000 genomes]
rs1892028
0.82[ASN][1000 genomes]
rs2365652
0.82[ASN][1000 genomes]
rs2719183
0.80[ASN][1000 genomes]
rs4128458
0.80[ASN][1000 genomes]
rs4915230
0.80[ASN][1000 genomes]
rs4915240
0.85[ASN][1000 genomes]
rs6703957
0.95[CEU][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs947485
0.91[ASN][1000 genomes]
rs947486
0.92[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
TNNT2
Proximal transcriptional regulation
LAD1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
GPR25
SCAN
ATP2B4
SCAN