SNP Report
Basic Infomation
| Name | rs2365652 dbSNP |
|---|---|
| Location | chr:1,201331664 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920179 | 0.95[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10920183 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10920184 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10920189 | 0.91[CHB][hapmap];0.82[JPT][hapmap] |
| rs1104859 | 0.87[CHB][hapmap] |
| rs12049476 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1419276 | 0.87[CHB][hapmap];0.81[CHD][hapmap] |
| rs1892027 | 0.87[CHB][hapmap];0.81[CHD][hapmap] |
| rs1892028 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3729547 | 0.87[CHB][hapmap];0.81[CHD][hapmap] |
| rs3729845 | 0.86[YRI][hapmap] |
| rs4915232 | 0.82[ASN][1000 genomes] |
| rs4915240 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6703957 | 0.84[CHB][hapmap] |
| rs947485 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs947486 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.87[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNT2 | Proximal transcriptional regulation |
| TNNT2 | Distal transcriptional regulation |
| TNNT2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014