SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10920179	0.83[CHB][hapmap];0.96[JPT][hapmap]
rs10920183	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10920184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10920189	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1104859	0.86[CHB][hapmap]
rs12049476	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1419276	0.86[CHB][hapmap]
rs1892027	0.86[CHB][hapmap]
rs2365652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3729547	0.86[CHB][hapmap]
rs3729845	0.84[YRI][hapmap]
rs4915232	0.82[ASN][1000 genomes]
rs4915240	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs947485	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs947486	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TNNT2	Proximal transcriptional regulation
TNNT2	Distal transcriptional regulation
TNNT2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)