SNP Report
Basic Infomation
| Name | rs947485 dbSNP |
|---|---|
| Location | chr:1,201345352 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920183 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10920184 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10920189 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs12049476 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1892028 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2365652 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2799677 | 0.82[JPT][hapmap] |
| rs3729845 | 0.81[YRI][hapmap] |
| rs4128458 | 0.82[JPT][hapmap] |
| rs4915232 | 0.91[ASN][1000 genomes] |
| rs4915240 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6703957 | 0.84[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs947486 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNT2 | Proximal transcriptional regulation |
| TNNT2 | Distal transcriptional regulation |
| LAD1 | Distal transcriptional regulation |
| TNNT2 | RNA binding protein mediated regulation |
| LAD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| GOLGA8A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014