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rVarBase
SNP Report
Basic Infomation
Name
rs4606345  
dbSNP
Location
chr:1,201364570
Allele
A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920189
0.82[CHB][hapmap]
rs2719183
0.82[ASN][1000 genomes]
rs2719185
0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2799677
0.82[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.81[ASN][1000 genomes]
rs4128458
0.95[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.82[ASN][1000 genomes]
rs4915230
0.82[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
LAD1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
RNPEP
SCAN
ATP2B4
SCAN
TNNT2
SCAN