SNP Report
Basic Infomation
| Name | rs10896015 dbSNP |
|---|---|
| Location | chr:11,65323725 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10896009 | 0.82[MEX][hapmap] |
| rs10896012 | 0.83[JPT][hapmap];0.82[MEX][hapmap] |
| rs10896016 | 0.80[JPT][hapmap] |
| rs11227221 | 0.80[JPT][hapmap] |
| rs1143756 | 0.83[ASN][1000 genomes] |
| rs1151496 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1151517 | 0.80[JPT][hapmap] |
| rs1152619 | 0.88[TSI][hapmap] |
| rs1152620 | 0.84[CEU][hapmap];0.94[TSI][hapmap] |
| rs11601767 | 0.80[JPT][hapmap];0.81[TSI][hapmap] |
| rs1194076 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1194077 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1194104 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12270054 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12360896 | 0.82[MEX][hapmap] |
| rs1346 | 0.89[CEU][hapmap];0.89[JPT][hapmap] |
| rs17146964 | 0.82[MEX][hapmap] |
| rs1783541 | 0.83[JPT][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap] |
| rs1787663 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs3200401 | 0.83[JPT][hapmap];0.82[MEX][hapmap] |
| rs3782091 | 0.80[JPT][hapmap] |
| rs4244811 | 0.80[JPT][hapmap] |
| rs59286748 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs600231 | 0.84[TSI][hapmap] |
| rs67924081 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs947791 | 0.83[JPT][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LTBP3 | Proximal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| FRMD8 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| HIST1H3H | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| LTBP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014