SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 7)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10896015	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1151496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1194076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1194077	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1194104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270054	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67924081	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SSSCA1	Proximal transcriptional regulation
FAM89B	Proximal transcriptional regulation
KPNA2	Distal transcriptional regulation
ABCC5	Distal transcriptional regulation
SUCLG2	Distal transcriptional regulation
ENSG00000241316	Distal transcriptional regulation
CA5BP1	Distal transcriptional regulation
LTBP3	Distal transcriptional regulation
NEAT1	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation
CFL1	Distal transcriptional regulation
MUS81	Distal transcriptional regulation
FRMD8	Distal transcriptional regulation
MAP3K11	Distal transcriptional regulation
PCNXL3	Distal transcriptional regulation
SIPA1	Distal transcriptional regulation
FIBP	Distal transcriptional regulation
CCDC85B	Distal transcriptional regulation
RELA	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)