SNP Report
Basic Infomation
| Name | rs1152619 dbSNP |
|---|---|
| Location | chr:11,65255589 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10896015 | 0.88[TSI][hapmap] |
| rs11227199 | 0.86[CEU][hapmap] |
| rs1152620 | 0.81[CEU][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1194076 | 0.88[TSI][hapmap] |
| rs1194338 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12270054 | 0.88[TSI][hapmap] |
| rs12360896 | 0.86[CEU][hapmap] |
| rs1621277 | 0.86[JPT][hapmap] |
| rs1626021 | 0.86[JPT][hapmap] |
| rs17146964 | 0.86[CEU][hapmap] |
| rs1784859 | 0.86[JPT][hapmap] |
| rs1787663 | 0.88[TSI][hapmap] |
| rs2846861 | 0.86[JPT][hapmap] |
| rs587080 | 0.80[AFR][1000 genomes] |
| rs588298 | 0.86[JPT][hapmap] |
| rs682845 | 0.86[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TAF12 | Distal transcriptional regulation |
| ENSG00000229388 | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| MIR612 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| FAM89B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014