SNP Report
Basic Infomation
| Name | rs600231 dbSNP |
|---|---|
| Location | chr:11,65260646 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10896015 | 0.84[TSI][hapmap] |
| rs10896016 | 0.89[TSI][hapmap] |
| rs11227221 | 0.90[MKK][hapmap];0.89[TSI][hapmap] |
| rs1152620 | 0.85[CEU][hapmap];0.83[TSI][hapmap] |
| rs11601767 | 0.86[ASW][hapmap];0.90[MKK][hapmap];0.92[TSI][hapmap] |
| rs1194076 | 0.84[TSI][hapmap] |
| rs1194338 | 0.84[EUR][1000 genomes] |
| rs12270054 | 0.84[TSI][hapmap] |
| rs1621277 | 0.82[JPT][hapmap];0.82[MEX][hapmap] |
| rs1626021 | 0.82[JPT][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1784100 | 0.81[ASN][1000 genomes] |
| rs1784101 | 0.84[AMR][1000 genomes] |
| rs1784859 | 0.82[JPT][hapmap];0.82[MEX][hapmap] |
| rs1784860 | 0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1787663 | 0.84[TSI][hapmap] |
| rs2105608 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2846861 | 0.82[JPT][hapmap];0.82[MEX][hapmap] |
| rs2957268 | 0.83[AMR][1000 genomes] |
| rs2957269 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3016343 | 0.81[ASN][1000 genomes] |
| rs3132742 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3132767 | 0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3782091 | 0.89[TSI][hapmap] |
| rs4244811 | 0.88[MKK][hapmap];0.89[TSI][hapmap] |
| rs587080 | 0.80[AMR][1000 genomes] |
| rs588298 | 0.82[JPT][hapmap];0.82[MEX][hapmap];0.87[AMR][1000 genomes] |
| rs591291 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs602838 | 0.81[ASN][1000 genomes] |
| rs604676 | 0.81[ASN][1000 genomes] |
| rs605035 | 0.80[AMR][1000 genomes] |
| rs661403 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs682845 | 0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7114809 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MALAT1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014