SNP Report
Basic Infomation
| Name | rs591291 dbSNP |
|---|---|
| Location | chr:11,65264482 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1194338 | 0.84[EUR][1000 genomes] |
| rs1626021 | 0.86[AMR][1000 genomes] |
| rs1784101 | 0.85[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1784860 | 0.84[AMR][1000 genomes] |
| rs2105608 | 0.86[AMR][1000 genomes] |
| rs2508712 | 0.80[AMR][1000 genomes] |
| rs2957268 | 0.84[AMR][1000 genomes] |
| rs2957269 | 0.85[AMR][1000 genomes] |
| rs3132742 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3132767 | 0.84[AMR][1000 genomes] |
| rs587080 | 0.81[AMR][1000 genomes] |
| rs588298 | 0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs600231 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs661403 | 0.86[AMR][1000 genomes] |
| rs7114809 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7934628 | 0.80[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MALAT1 | Proximal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| EHBP1L1 | Distal transcriptional regulation |
| ENSG00000269018 | Distal transcriptional regulation |
| KCNK7 | Distal transcriptional regulation |
| FAM89B | Distal transcriptional regulation |
| CFL1 | Distal transcriptional regulation |
| MUS81 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| TIGD3 | Distal transcriptional regulation |
| ENSG00000255478 | Distal transcriptional regulation |
| SLC25A45 | Distal transcriptional regulation |
| FRMD8 | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| FOSL1 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| BOLA1 | Distal transcriptional regulation |
| HIST2H2AB | Distal transcriptional regulation |
| LRCH4 | Distal transcriptional regulation |
| FBXO24 | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014