SNP Report
Basic Infomation
| Name | rs3132742 dbSNP |
|---|---|
| Location | chr:11,65263001 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1194338 | 0.83[EUR][1000 genomes] |
| rs1626021 | 0.82[AMR][1000 genomes] |
| rs1784101 | 0.81[AMR][1000 genomes] |
| rs1784860 | 0.80[AMR][1000 genomes] |
| rs2105608 | 0.82[AMR][1000 genomes] |
| rs2957268 | 0.80[AMR][1000 genomes] |
| rs2957269 | 0.81[AMR][1000 genomes] |
| rs3132767 | 0.80[AMR][1000 genomes] |
| rs588298 | 0.84[AMR][1000 genomes] |
| rs591291 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs600231 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs661403 | 0.82[AMR][1000 genomes] |
| rs7114809 | 0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MALAT1 | Proximal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| TIGD3 | Distal transcriptional regulation |
| ENSG00000255478 | Distal transcriptional regulation |
| SLC25A45 | Distal transcriptional regulation |
| FRMD8 | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| MIR612 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| FAM89B | Distal transcriptional regulation |
| EHBP1L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014