SNP Report
Basic Infomation
| Name | rs11227221 dbSNP |
|---|---|
| Location | chr:11,65319265 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10896015 | 0.80[JPT][hapmap] |
| rs10896016 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1111934 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1151517 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11601767 | 0.92[ASW][hapmap];0.82[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11604423 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11607147 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1194076 | 0.80[JPT][hapmap] |
| rs12270054 | 0.80[JPT][hapmap] |
| rs1787663 | 0.80[JPT][hapmap] |
| rs3782091 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4244811 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs600231 | 0.90[MKK][hapmap];0.89[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LTBP3 | Proximal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| CFL1 | Distal transcriptional regulation |
| MUS81 | Distal transcriptional regulation |
| AP5B1 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| SIPA1 | Distal transcriptional regulation |
| MAP3K11 | Distal transcriptional regulation |
| PCNXL3 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| LTBP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014