SNP Report
Basic Infomation
| Name | rs3200401 dbSNP |
|---|---|
| Location | chr:11,65271832 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10896004 | 0.81[ASN][1000 genomes] |
| rs10896005 | 0.83[ASN][1000 genomes] |
| rs10896006 | 0.83[ASN][1000 genomes] |
| rs10896008 | 0.83[ASN][1000 genomes] |
| rs10896009 | 1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs10896010 | 0.83[ASN][1000 genomes] |
| rs10896012 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10896015 | 0.83[JPT][hapmap];0.82[MEX][hapmap] |
| rs11227196 | 0.83[ASN][1000 genomes] |
| rs11227197 | 0.83[ASN][1000 genomes] |
| rs11227198 | 0.81[ASN][1000 genomes] |
| rs11227199 | 1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11227201 | 0.83[ASN][1000 genomes] |
| rs11227202 | 0.83[ASN][1000 genomes] |
| rs11227205 | 0.84[ASN][1000 genomes] |
| rs11227206 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1194076 | 0.83[JPT][hapmap];0.82[MEX][hapmap] |
| rs12269965 | 0.83[ASN][1000 genomes] |
| rs12269975 | 0.83[ASN][1000 genomes] |
| rs12270054 | 0.83[JPT][hapmap];0.87[MEX][hapmap] |
| rs12294910 | 0.83[ASN][1000 genomes] |
| rs12360896 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs12364730 | 0.83[ASN][1000 genomes] |
| rs12788055 | 0.81[ASN][1000 genomes] |
| rs12808303 | 0.81[ASN][1000 genomes] |
| rs1346 | 0.84[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap] |
| rs17146964 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.96[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs1783541 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];0.96[TSI][hapmap] |
| rs1787663 | 0.85[CEU][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap] |
| rs2508710 | 0.83[ASN][1000 genomes] |
| rs34527830 | 0.81[ASN][1000 genomes] |
| rs34582634 | 0.81[ASN][1000 genomes] |
| rs34877911 | 0.83[ASN][1000 genomes] |
| rs35292734 | 0.83[ASN][1000 genomes] |
| rs35469818 | 0.83[ASN][1000 genomes] |
| rs35826299 | 0.83[ASN][1000 genomes] |
| rs4102217 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7128776 | 0.83[ASN][1000 genomes] |
| rs7931615 | 0.82[ASN][1000 genomes] |
| rs947791 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.96[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAP3K6 | Distal transcriptional regulation |
| PSMB2 | Distal transcriptional regulation |
| JUN | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| ENSG00000242557 | Distal transcriptional regulation |
| GABPB2 | Distal transcriptional regulation |
| TUFT1 | Distal transcriptional regulation |
| ENSG00000232536 | Distal transcriptional regulation |
| SMG5 | Distal transcriptional regulation |
| JMJD1C | Distal transcriptional regulation |
| RNU4-2 | Distal transcriptional regulation |
| CBX5 | Distal transcriptional regulation |
| HNRNPA1 | Distal transcriptional regulation |
| LNX2 | Distal transcriptional regulation |
| CUL4A | Distal transcriptional regulation |
| PCID2 | Distal transcriptional regulation |
| CDADC1 | Distal transcriptional regulation |
| L3HYPDH | Distal transcriptional regulation |
| JKAMP | Distal transcriptional regulation |
| SHC4 | Distal transcriptional regulation |
| EID1 | Distal transcriptional regulation |
| SNX1 | Distal transcriptional regulation |
| SETD1A | Distal transcriptional regulation |
| ENSG00000266947 | Distal transcriptional regulation |
| SLFN5 | Distal transcriptional regulation |
| YWHAE | Distal transcriptional regulation |
| DERL2 | Distal transcriptional regulation |
| MIS12 | Distal transcriptional regulation |
| COPS3 | Distal transcriptional regulation |
| KANSL1-AS1 | Distal transcriptional regulation |
| KANSL1 | Distal transcriptional regulation |
| IMPA2 | Distal transcriptional regulation |
| NR2F6 | Distal transcriptional regulation |
| DNAJB1 | Distal transcriptional regulation |
| RPL31 | Distal transcriptional regulation |
| ENSG00000223947 | Distal transcriptional regulation |
| ENSG00000222724 | Distal transcriptional regulation |
| C20orf111 | Distal transcriptional regulation |
| PDCD10 | Distal transcriptional regulation |
| ATP1B3 | Distal transcriptional regulation |
| KPNA1 | Distal transcriptional regulation |
| KIAA1430 | Distal transcriptional regulation |
| TRIM41 | Distal transcriptional regulation |
| OXCT1-AS1 | Distal transcriptional regulation |
| OXCT1 | Distal transcriptional regulation |
| ERBB2IP | Distal transcriptional regulation |
| CANX | Distal transcriptional regulation |
| LIFR | Distal transcriptional regulation |
| LIFR-AS1 | Distal transcriptional regulation |
| MGAT1 | Distal transcriptional regulation |
| TSPYL4 | Distal transcriptional regulation |
| DSE | Distal transcriptional regulation |
| ENSG00000237021 | Distal transcriptional regulation |
| TFAP2A | Distal transcriptional regulation |
| HIST1H1C | Distal transcriptional regulation |
| HIST1H2BG | Distal transcriptional regulation |
| HIST1H3J | Distal transcriptional regulation |
| HIST1H2AM | Distal transcriptional regulation |
| HIST1H2BO | Distal transcriptional regulation |
| MCM7 | Distal transcriptional regulation |
| MRRF | Distal transcriptional regulation |
| RBM18 | Distal transcriptional regulation |
| SYAP1 | Distal transcriptional regulation |
| EIF4G2 | Distal transcriptional regulation |
| CD59 | Distal transcriptional regulation |
| CCDC90B | Distal transcriptional regulation |
| ENSG00000255234 | Distal transcriptional regulation |
| SNORD76 | Distal transcriptional regulation |
| GAS5 | Distal transcriptional regulation |
| SNORD74 | Distal transcriptional regulation |
| ZBTB37 | Distal transcriptional regulation |
| COX4I1 | Distal transcriptional regulation |
| ATF4 | Distal transcriptional regulation |
| ENSG00000268886 | Distal transcriptional regulation |
| RNU5B-1 | Distal transcriptional regulation |
| ZCWPW1 | Distal transcriptional regulation |
| MEPCE | Distal transcriptional regulation |
| BRD2 | Distal transcriptional regulation |
| ENSG00000263756 | Distal transcriptional regulation |
| LTBP3 | Distal transcriptional regulation |
| ENSG00000260233 | Distal transcriptional regulation |
| SSSCA1 | Distal transcriptional regulation |
| FAM89B | Distal transcriptional regulation |
| PCBP2 | Distal transcriptional regulation |
| TRIM52 | Distal transcriptional regulation |
| ENSG00000248275 | Distal transcriptional regulation |
| DCTN6 | Distal transcriptional regulation |
| TIGD3 | Distal transcriptional regulation |
| ENSG00000255478 | Distal transcriptional regulation |
| SLC25A45 | Distal transcriptional regulation |
| FRMD8 | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| MIR612 | Distal transcriptional regulation |
| CHRAC1 | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| HIST1H2BI | Distal transcriptional regulation |
| EHBP1L1 | Distal transcriptional regulation |
| HIST1H2BF | Distal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| MALAT1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014