SNP Report

Basic Infomation

Name	rs10509645 dbSNP
Location	chr:10,94277866
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1044153	0.86[EUR][1000 genomes]
rs10786048	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882067	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882071	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882072	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882074	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882083	0.87[ASN][1000 genomes]
rs10882085	0.86[EUR][1000 genomes]
rs10882092	0.86[EUR][1000 genomes]
rs10882095	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs10882096	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs10882099	0.85[CHB][hapmap]
rs11187022	1.00[ASN][1000 genomes]
rs11187030	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187072	0.87[ASN][1000 genomes]
rs11187078	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11187090	0.86[EUR][1000 genomes]
rs11187096	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs11187098	0.85[EUR][1000 genomes]
rs11187099	0.86[EUR][1000 genomes]
rs11187107	0.85[EUR][1000 genomes]
rs11187114	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs11187117	0.83[EUR][1000 genomes]
rs12220493	0.87[ASN][1000 genomes]
rs12355158	0.85[EUR][1000 genomes]
rs1573051	0.86[EUR][1000 genomes]
rs1972360	0.85[EUR][1000 genomes]
rs2421943	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2421945	0.82[JPT][hapmap]
rs2798253	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3824735	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs4304670	0.82[JPT][hapmap]
rs7073833	0.89[ASN][1000 genomes]
rs7078418	0.85[ASN][1000 genomes]
rs7099761	0.81[JPT][hapmap]
rs7921210	0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IDE	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
STAMBPL1	SCAN
HECTD2	SCAN
KIF11	SCAN
NOC3L	SCAN