SNP Report
Basic Infomation
| Name | rs7099761 dbSNP |
|---|---|
| Location | chr:10,94335799 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509645 | 0.81[JPT][hapmap] |
| rs10786049 | 0.82[ASN][1000 genomes] |
| rs10882074 | 0.81[JPT][hapmap] |
| rs10882083 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11187033 | 0.81[JPT][hapmap] |
| rs11187072 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11187076 | 0.83[ASW][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap] |
| rs11187078 | 1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs11187096 | 0.81[JPT][hapmap] |
| rs12220493 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2421943 | 0.88[CEU][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2421945 | 0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2798253 | 0.81[JPT][hapmap] |
| rs3824735 | 0.82[JPT][hapmap] |
| rs4304670 | 0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs7073833 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7078243 | 0.88[GIH][hapmap] |
| rs7078418 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7900991 | 0.92[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7905037 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7921210 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7921325 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IDE | Proximal transcriptional regulation |
| KIF11 | Distal transcriptional regulation |
| IDE | Distal transcriptional regulation |
| HHEX | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014