SNP Report
Basic Infomation
| Name | rs7078243 dbSNP |
|---|---|
| Location | chr:10,94414263 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736069 | 0.81[CEU][hapmap] |
| rs10882091 | 0.81[TSI][hapmap] |
| rs11187060 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
| rs11187076 | 0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1832197 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
| rs6583830 | 0.81[TSI][hapmap] |
| rs6583833 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7071912 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7078413 | 0.93[ASW][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap] |
| rs7099761 | 0.88[GIH][hapmap] |
| rs7914814 | 0.81[TSI][hapmap] |
| rs7921040 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF11 | Proximal transcriptional regulation |
| ENSG00000264313 | Proximal transcriptional regulation |
| KIF11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014