SNP Report
Basic Infomation
| Name | rs11187060 dbSNP |
|---|---|
| Location | chr:10,94304132 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11187046 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17107734 | 0.82[JPT][hapmap] |
| rs1832197 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1999763 | 0.81[JPT][hapmap] |
| rs1999764 | 0.81[JPT][hapmap] |
| rs2421945 | 0.88[ASW][hapmap];0.84[CEU][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3758503 | 0.81[JPT][hapmap] |
| rs3758505 | 0.81[JPT][hapmap] |
| rs4304670 | 0.84[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6583833 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
| rs7068618 | 0.81[JPT][hapmap] |
| rs7075851 | 0.81[JPT][hapmap] |
| rs7078243 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
| rs7078413 | 0.87[ASW][hapmap];0.92[CHB][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7097800 | 0.80[JPT][hapmap] |
| rs7900584 | 0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IDE | Proximal transcriptional regulation |
| IDE | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| C2orf27 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014