SNP Report
Name | rs7097800   dbSNP |
---|---|
Location | chr:10,94259699 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10882069 | 0.80[ASN][1000 genomes] |
rs10882086 | 0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap] |
rs10882088 | 0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap] |
rs11186999 | 0.82[ASN][1000 genomes] |
rs11187000 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11187060 | 0.80[JPT][hapmap] |
rs11187108 | 0.89[CHB][hapmap];0.86[GIH][hapmap] |
rs11187115 | 0.89[CHB][hapmap];0.85[JPT][hapmap] |
rs11595187 | 0.89[CHB][hapmap] |
rs12416180 | 0.89[CHB][hapmap];0.85[JPT][hapmap] |
rs17107734 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
rs1832197 | 0.80[JPT][hapmap] |
rs1999763 | 0.89[CHB][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap] |
rs1999764 | 0.89[CHB][hapmap];0.90[JPT][hapmap] |
rs2275219 | 0.89[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap] |
rs2297743 | 0.89[CHB][hapmap];0.85[JPT][hapmap] |
rs2421940 | 0.96[GIH][hapmap];0.84[JPT][hapmap] |
rs3758503 | 0.89[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap] |
rs3758505 | 0.89[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap] |
rs4646954 | 0.93[GIH][hapmap];0.84[JPT][hapmap] |
rs4933731 | 0.88[CHB][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap] |
rs6583820 | 0.94[ASW][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.84[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
rs7068618 | 0.94[ASW][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[ASN][1000 genomes] |
rs7075851 | 0.89[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
rs7079099 | 0.89[CHB][hapmap];0.81[JPT][hapmap] |
rs7900584 | 0.89[CHB][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap] |
rs7910605 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
IDE | Proximal transcriptional regulation |
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL related gene | Source |
---|---|
SLC16A12 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014