SNP Report
Basic Infomation
| Name | rs10882069 dbSNP |
|---|---|
| Location | chr:10,94255039 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10882070 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10882078 | 0.90[ASN][1000 genomes] |
| rs11186999 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11187077 | 0.81[ASN][1000 genomes] |
| rs12218329 | 0.90[ASN][1000 genomes] |
| rs12414433 | 0.84[ASN][1000 genomes] |
| rs12416180 | 0.90[ASN][1000 genomes] |
| rs17107734 | 0.90[ASN][1000 genomes] |
| rs1999763 | 0.87[ASN][1000 genomes] |
| rs1999764 | 0.87[ASN][1000 genomes] |
| rs2421940 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35973022 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3758503 | 0.84[ASN][1000 genomes] |
| rs3758505 | 0.84[ASN][1000 genomes] |
| rs3781237 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4646954 | 0.85[ASN][1000 genomes] |
| rs59415214 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6583820 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7068618 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7075851 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7079099 | 0.90[ASN][1000 genomes] |
| rs7089987 | 0.90[ASN][1000 genomes] |
| rs7097800 | 0.80[ASN][1000 genomes] |
| rs7895832 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7900584 | 0.84[ASN][1000 genomes] |
| rs7916460 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IDE | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014