SNP Report
Basic Infomation
| Name | rs4646954 dbSNP |
|---|---|
| Location | chr:10,94333827 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10882069 | 0.85[ASN][1000 genomes] |
| rs10882070 | 0.81[ASN][1000 genomes] |
| rs10882078 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10882086 | 0.89[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10882088 | 0.89[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10882093 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11186999 | 0.88[ASN][1000 genomes] |
| rs11187077 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11187092 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11187108 | 0.89[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11187115 | 0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11595187 | 0.89[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12218324 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12218329 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12411873 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12414433 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12416180 | 0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17107734 | 0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1999763 | 0.89[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1999764 | 0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2275219 | 0.89[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2297743 | 0.89[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2421940 | 0.84[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3758503 | 0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3758505 | 0.94[ASW][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4933731 | 0.88[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4933732 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6583820 | 0.83[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7068118 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7068618 | 0.89[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7075851 | 0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7078413 | 0.84[JPT][hapmap] |
| rs7079099 | 0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7089987 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7097800 | 0.93[GIH][hapmap];0.84[JPT][hapmap] |
| rs74151674 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7895832 | 0.84[JPT][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7900584 | 0.86[ASW][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7910605 | 0.93[GIH][hapmap] |
| rs7916460 | 0.82[ASN][1000 genomes] |
| rs7916594 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IDE | Proximal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| ENSG00000201699 | Distal transcriptional regulation |
| TPM4 | Distal transcriptional regulation |
| FBXO8 | Distal transcriptional regulation |
| CEP44 | Distal transcriptional regulation |
| KIF11 | Distal transcriptional regulation |
| HHEX | Distal transcriptional regulation |
| IDE | Distal transcriptional regulation |
| EXOC6 | Distal transcriptional regulation |
| ENSG00000225118 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014