SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10882086	0.86[GIH][hapmap];0.81[JPT][hapmap]
rs10882088	0.86[GIH][hapmap];0.81[JPT][hapmap]
rs11187000	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187108	0.86[GIH][hapmap]
rs11187115	0.81[JPT][hapmap]
rs12416180	0.80[JPT][hapmap]
rs17107734	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1999763	0.96[GIH][hapmap];0.85[JPT][hapmap]
rs1999764	0.85[JPT][hapmap]
rs2275219	0.86[GIH][hapmap];0.81[JPT][hapmap]
rs2297743	0.81[JPT][hapmap]
rs2421940	0.90[CHB][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3758503	0.93[GIH][hapmap];0.85[JPT][hapmap]
rs3758505	0.93[GIH][hapmap];0.85[JPT][hapmap]
rs4646954	0.93[GIH][hapmap]
rs4933731	0.86[GIH][hapmap];0.81[JPT][hapmap]
rs6583820	0.88[ASW][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7068618	0.88[ASW][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7075851	0.85[JPT][hapmap]
rs7097800	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895832	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7900584	0.93[GIH][hapmap];0.85[JPT][hapmap]
rs7916460	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IDE	Proximal transcriptional regulation
CENPK	Distal transcriptional regulation
PPWD1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)