SNP Report
Basic Infomation
| Name | rs2421945 dbSNP |
|---|---|
| Location | chr:10,94331341 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509645 | 0.82[JPT][hapmap] |
| rs10786049 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10882074 | 0.82[JPT][hapmap] |
| rs11187033 | 0.82[JPT][hapmap] |
| rs11187046 | 0.84[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11187060 | 0.88[ASW][hapmap];0.84[CEU][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11187078 | 0.89[CHB][hapmap] |
| rs1832197 | 0.87[GIH][hapmap];0.89[MKK][hapmap] |
| rs2421943 | 0.82[JPT][hapmap] |
| rs2798253 | 0.82[JPT][hapmap] |
| rs4304670 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7078413 | 0.85[GIH][hapmap] |
| rs7099761 | 0.89[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs7905037 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF11 | Distal transcriptional regulation |
| IDE | Distal transcriptional regulation |
| HHEX | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014