SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10509645	0.82[JPT][hapmap]
rs10786049	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10882074	0.82[JPT][hapmap]
rs11187033	0.83[JPT][hapmap]
rs11187046	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11187060	0.84[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11187078	0.90[CHB][hapmap]
rs2421943	0.82[JPT][hapmap]
rs2421945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798253	0.83[JPT][hapmap]
rs7099761	0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7905037	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
KIF11	Distal transcriptional regulation
IDE	Distal transcriptional regulation
HHEX	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)