SNP Report
Basic Infomation
| Name | rs10882099 dbSNP |
|---|---|
| Location | chr:10,94460650 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509645 | 0.85[CHB][hapmap] |
| rs10882095 | 0.84[CHB][hapmap] |
| rs10882098 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10882102 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs11187033 | 0.85[CHB][hapmap] |
| rs11187096 | 0.81[CHB][hapmap] |
| rs11187114 | 0.84[CHB][hapmap] |
| rs11187138 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11187139 | 0.97[EUR][1000 genomes] |
| rs12219514 | 0.91[EUR][1000 genomes] |
| rs2185756 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2421943 | 0.81[CHB][hapmap] |
| rs35906730 | 0.84[EUR][1000 genomes] |
| rs3824735 | 0.85[CHB][hapmap] |
| rs5015480 | 1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs7903302 | 0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000201412 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014