SNP Report
Basic Infomation
| Name | rs5015480 dbSNP |
|---|---|
| Location | chr:10,94465559 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10882098 | 0.97[EUR][1000 genomes] |
| rs10882099 | 1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs10882102 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11187138 | 1.00[EUR][1000 genomes] |
| rs11187139 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12219514 | 0.85[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2185756 | 0.92[EUR][1000 genomes] |
| rs35906730 | 0.83[EUR][1000 genomes] |
| rs7087591 | 0.89[ASW][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs7903302 | 0.84[EUR][1000 genomes] |
| rs7923837 | 0.86[JPT][hapmap] |
| rs7923866 | 0.86[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EXOC6 | Distal transcriptional regulation |
| HHEX | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014