SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10786053	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882102	0.81[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs10882104	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882105	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187139	0.88[AFR][1000 genomes]
rs11187140	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187141	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11817277	0.82[YRI][hapmap]
rs2901609	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34744311	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4933736	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5015480	0.89[ASW][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs6583826	0.86[JPT][hapmap]
rs7923837	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7923866	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000201412	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)