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rVarBase
SNP Report
Basic Infomation
Name
rs10882098  
dbSNP
Location
chr:10,94444793
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1044153
0.80[AFR][1000 genomes]
rs10882099
0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882102
0.96[EUR][1000 genomes]
rs11187138
0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187139
0.96[EUR][1000 genomes]
rs12219514
0.91[EUR][1000 genomes]
rs2185756
0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35906730
0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5015480
0.97[EUR][1000 genomes]
rs7903302
0.85[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
HHEX
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)