SNP Report
Basic Infomation
| Name | rs10203477 dbSNP |
|---|---|
| Location | chr:2,61104985 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10185028 | 0.86[LWK][hapmap];1.00[YRI][hapmap] |
| rs10209620 | 0.88[YRI][hapmap] |
| rs1053862 | 0.92[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11125859 | 1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1206 | 0.97[GIH][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12713428 | 0.94[YRI][hapmap] |
| rs13019590 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs13026755 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13031237 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13422089 | 0.93[YRI][hapmap] |
| rs1432295 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs34695944 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs5013203 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs62149416 | 0.89[ASN][1000 genomes] |
| rs62149417 | 0.89[ASN][1000 genomes] |
| rs62149419 | 0.89[ASN][1000 genomes] |
| rs6545832 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6545835 | 0.94[YRI][hapmap] |
| rs6545836 | 0.82[YRI][hapmap] |
| rs66609926 | 0.89[ASN][1000 genomes] |
| rs6706689 | 0.85[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs67574266 | 0.89[ASN][1000 genomes] |
| rs71398604 | 0.89[ASN][1000 genomes] |
| rs72807470 | 0.89[ASN][1000 genomes] |
| rs7604989 | 0.82[YRI][hapmap] |
| rs9309331 | 0.82[YRI][hapmap] |
| rs9752570 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| REL | Proximal transcriptional regulation |
| ENSG00000228414 | Distal transcriptional regulation |
| REL | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014