SNP Report
Name | rs1053862   dbSNP |
---|---|
Location | chr:2,61167761 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10185028 | 0.80[LWK][hapmap];0.94[YRI][hapmap] |
rs10203477 | 0.92[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10209620 | 0.94[YRI][hapmap] |
rs11125859 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1206 | 0.93[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12713428 | 0.88[YRI][hapmap] |
rs13019590 | 1.00[JPT][hapmap] |
rs13026755 | 1.00[JPT][hapmap] |
rs13031237 | 1.00[JPT][hapmap] |
rs13422089 | 0.86[YRI][hapmap] |
rs1432295 | 1.00[JPT][hapmap] |
rs34695944 | 1.00[JPT][hapmap] |
rs5013203 | 1.00[JPT][hapmap] |
rs6545832 | 1.00[JPT][hapmap] |
rs6545835 | 0.88[YRI][hapmap] |
rs6706689 | 0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9752570 | 0.94[YRI][hapmap] |
Symbol | Regulation type |
---|---|
ENSG00000232713 | Proximal transcriptional regulation |
NONOP2 | Proximal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
AHSA2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014