SNP Report
Basic Infomation
| Name | rs6545835 dbSNP |
|---|---|
| Location | chr:2,61112552 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10174032 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10176601 | 0.87[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10179897 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10182774 | 0.87[CEU][hapmap] |
| rs10185028 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10193310 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10193964 | 1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10195800 | 0.87[CEU][hapmap] |
| rs10203477 | 0.94[YRI][hapmap] |
| rs10208137 | 0.89[ASW][hapmap];0.87[CEU][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10208155 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10208309 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10209620 | 0.94[CEU][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10211029 | 0.87[CEU][hapmap] |
| rs1053862 | 0.88[YRI][hapmap] |
| rs12713428 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13008738 | 0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13027883 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13033143 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13406503 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13420509 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13422089 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs17538840 | 0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6545836 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6706689 | 0.88[YRI][hapmap] |
| rs6707682 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67766926 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs71420378 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72807480 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7604989 | 1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9309331 | 0.94[CEU][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9752570 | 0.94[CEU][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000228414 | Proximal transcriptional regulation |
| ENSG00000228414 | Distal transcriptional regulation |
| REL | Distal transcriptional regulation |
| REL | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014