SNP Report

Basic Infomation

Name	rs6545836 dbSNP
Location	chr:2,61122973
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10174032	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10176601	0.87[CEU][hapmap];0.81[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10179897	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10182774	0.87[CEU][hapmap]
rs10185028	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193310	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10193964	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195800	0.87[CEU][hapmap]
rs10203477	0.82[YRI][hapmap]
rs10208137	0.89[ASW][hapmap];0.87[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10208155	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10208309	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10209620	0.94[CEU][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10211029	0.87[CEU][hapmap]
rs12713428	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008738	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13027883	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13033143	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13406503	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420509	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13422089	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17538840	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6545835	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707682	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67766926	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71420378	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807480	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7604989	1.00[CEU][hapmap];0.86[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309331	0.94[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9752570	0.94[CEU][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
REL	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
KLHL34	SCAN
AHSA2	Pritchard
AHSA2	SCAN
PUS10	SCAN