SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 6)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10203477	0.97[GIH][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10208155	0.91[YRI][hapmap]
rs1053862	0.93[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11125859	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6706689	0.85[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6727926	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000232713	Proximal transcriptional regulation
NONOP2	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)