SNP Report
Basic Infomation
| Name | rs62149419 dbSNP |
|---|---|
| Location | chr:2,61090226 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10203477 | 0.89[ASN][1000 genomes] |
| rs13019590 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13031237 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13031721 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1432295 | 1.00[ASN][1000 genomes] |
| rs34493725 | 0.81[ASN][1000 genomes] |
| rs34695944 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5013203 | 1.00[ASN][1000 genomes] |
| rs55708439 | 0.81[ASN][1000 genomes] |
| rs62149416 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62149417 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6545832 | 1.00[ASN][1000 genomes] |
| rs66609926 | 1.00[ASN][1000 genomes] |
| rs67574266 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71398604 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72807470 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000228414 | Distal transcriptional regulation |
| REL | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014