SNP Report

Basic Infomation

Name	rs963986 dbSNP
Location	chr:17,40561579
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1026916	0.95[JPT][hapmap]
rs11079043	1.00[JPT][hapmap]
rs1129422	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12150088	0.83[ASN][1000 genomes]
rs12453307	0.83[ASN][1000 genomes]
rs12942547	0.95[JPT][hapmap]
rs12949918	0.95[JPT][hapmap]
rs17885629	0.95[JPT][hapmap]
rs2883456	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs34154026	0.83[ASN][1000 genomes]
rs3785898	1.00[JPT][hapmap]
rs3816769	0.95[JPT][hapmap]
rs4103200	1.00[JPT][hapmap]
rs4365333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796791	0.95[JPT][hapmap]
rs4796793	1.00[JPT][hapmap]
rs56364076	0.83[ASN][1000 genomes]
rs6503695	1.00[JPT][hapmap]
rs6503696	1.00[JPT][hapmap]
rs6503697	1.00[JPT][hapmap]
rs709631	0.81[ASN][1000 genomes]
rs7211777	0.95[JPT][hapmap]
rs7217655	0.95[JPT][hapmap]
rs7219739	0.95[JPT][hapmap]
rs7222712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823047	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744166	0.95[JPT][hapmap]
rs8067690	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8069645	1.00[JPT][hapmap]
rs8078850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs957970	0.95[JPT][hapmap]
rs963987	0.80[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs963988	0.80[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9891119	0.95[JPT][hapmap]
rs9912773	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
PTRF	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)