SNP Report
Basic Infomation
| Name | rs12942547 dbSNP |
|---|---|
| Location | chr:17,40527544 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 61)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1026916 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11079043 | 0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs12601611 | 0.86[ASN][1000 genomes] |
| rs12602466 | 0.84[ASN][1000 genomes] |
| rs12937642 | 0.91[ASN][1000 genomes] |
| rs12942611 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12949918 | 0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12950549 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13342031 | 0.91[ASN][1000 genomes] |
| rs17885629 | 0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17885741 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17886724 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1905340 | 0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1905341 | 0.85[ASN][1000 genomes] |
| rs2128786 | 0.80[ASN][1000 genomes] |
| rs2306581 | 0.96[ASN][1000 genomes] |
| rs2883456 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs35314169 | 0.86[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs35840966 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35950888 | 0.92[ASN][1000 genomes] |
| rs3736164 | 0.91[ASN][1000 genomes] |
| rs3785898 | 0.88[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3816769 | 0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3869550 | 0.90[ASN][1000 genomes] |
| rs4103200 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs4796647 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4796791 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.98[ASN][1000 genomes] |
| rs4796793 | 0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs58288833 | 0.80[ASN][1000 genomes] |
| rs62075772 | 0.96[ASN][1000 genomes] |
| rs6503695 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs6503696 | 0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs6503697 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs7211777 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7214610 | 0.91[ASN][1000 genomes] |
| rs7217655 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7219059 | 0.91[ASN][1000 genomes] |
| rs7219739 | 0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7224007 | 0.93[ASN][1000 genomes] |
| rs7224416 | 0.91[ASN][1000 genomes] |
| rs744166 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8068748 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8069645 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs8070763 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs8071537 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8072391 | 0.93[ASN][1000 genomes] |
| rs8073517 | 0.96[ASN][1000 genomes] |
| rs8073836 | 0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8075676 | 0.86[ASN][1000 genomes] |
| rs8076051 | 0.95[ASN][1000 genomes] |
| rs8081037 | 0.96[ASN][1000 genomes] |
| rs957970 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs957971 | 1.00[ASN][1000 genomes] |
| rs963986 | 0.95[JPT][hapmap] |
| rs963987 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs963988 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs9891119 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9895473 | 0.86[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9897389 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9912773 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs9913597 | 0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STAT3 | Distal transcriptional regulation |
| STAT3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014