SNP Report
Basic Infomation
| Name | rs12150088 dbSNP |
|---|---|
| Location | chr:17,40564303 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1129422 | 0.81[ASN][1000 genomes] |
| rs11653437 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12453307 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2128786 | 0.81[ASN][1000 genomes] |
| rs2883456 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34154026 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4365333 | 0.83[ASN][1000 genomes] |
| rs56364076 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs709631 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7222712 | 0.83[ASN][1000 genomes] |
| rs72823047 | 0.83[ASN][1000 genomes] |
| rs8067690 | 0.81[ASN][1000 genomes] |
| rs8078850 | 0.82[ASN][1000 genomes] |
| rs963986 | 0.83[ASN][1000 genomes] |
| rs963987 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs963988 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PTRF | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014